Just a couple of wishes I believe have been touched upon before, but still…
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Waveform display: An additional column per track that displays the waveforms of inserted notes vertically. This column should be hidden by default, but with the option of displaying it by clicking an arrow or icon or some such, similar to additional note and effect columns. Very useful for aligning longer loops. Also, it would be sweet if hovering the mouse above a point on the waveform could display the sample offset.
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More ticks per line and expanded delay command. Currently, at a speed of 6 you can only use d0-d5. It would be nice to use e.g. d00 to dXX to be able to insert small timing differences on e.g hits in a drum track, for a more human feel.