This happened a few times today when trying to render a track. It plays fine in Renoise using jack or alsa (normally using jack) but when rendering it to .wav, sometimes a track using a VST will be completely out of tune by typically a major 3rd (2 steps) or a tritone. Need to do more testing after i get some sleep, but seems like it might be related to rendering to 48KHz vs 44.1KHz…?
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Does it happen when you use jack or alsa?Try exporting at first only using jack and then again only using alsa.It sounds to me like a jack problem